SMTL ID : 3vey.1

glucokinase in complex with glucose and ATPgS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 16 residues within 4Å: Chain A: S.141, F.142, P.143, T.158, K.159, N.194, D.195, T.196, I.215, G.219, C.220, N.221, E.246, Q.277, E.280 Ligands: AGS.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.158, A:T.158, A:K.159, A:N.194, A:N.194, A:C.220, A:N.221, A:E.246, A:Q.277 Salt bridges: A:K.159

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: M.228, V.231, V.234, G.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.231, A:D.237

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 18 residues within 4Å: Chain A: G.71, T.72, K.159, D.195, I.215, G.217, T.218, G.219, G.285, K.286, T.322, R.323, S.326, G.400, S.401, V.402, L.405 Ligands: GLC.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.72, A:K.159, A:D.195, A:T.218, A:T.218, A:T.218, A:G.219, A:S.326, A:S.326, A:S.401, A:S.401 Water bridges: A:G.71, A:G.285, A:T.322, A:G.400

1 x 0H5: 6-methoxy-N-(1-methyl-1H-pyrazol-3-yl)quinazolin-4-amine(Non-covalent)

0H5.4: 12 residues within 4Å: Chain A: Y.51, V.52, R.53, S.54, T.55, I.201, Y.204, Y.205, M.225, L.441, V.442, V.445 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.55, A:I.201, A:I.201, A:V.442, A:V.445 Hydrogen bonds: A:R.53, A:R.53 pi-Stacking: A:Y.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Insights into Mechanism of Glucokinase Activation: OBSERVATION OF MULTIPLE DISTINCT PROTEIN CONFORMATIONS. J.Biol.Chem. (2012)

Release Date

2012-02-08

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase

Related Entries With Identical Sequence