SMTL ID : 3vf0.1

Raver1 in complex with metavinculin L954 deletion mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

hetero-1-1-mer

Ligands

13 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: P.105, S.136, K.137, Q.243, S.259, F.260 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.165, A:Q.243 Water bridges: A:R.165, A:D.247, A:D.247, A:F.260 GOL.2: 5 residues within 4Å: Chain A: P.104, P.105, S.106, P.164, R.165 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.106, A:S.106, A:R.165, A:R.165 Water bridges: A:R.257 GOL.3: 4 residues within 4Å: Chain A: K.24, Y.50, T.63, M.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.63, A:T.63 GOL.4: 5 residues within 4Å: Chain A: R.17, N.21, N.66, G.67, E.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.21, A:G.67, A:E.68, A:E.68 Water bridges: A:N.21 GOL.5: 5 residues within 4Å: Chain A: Q.18, E.113, L.122, E.123, C.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.18, A:Q.18, A:E.123 GOL.6: 4 residues within 4Å: Chain A: T.35, N.36, Q.37, K.55 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.35, A:N.36, A:Q.37, A:K.55, A:K.55 GOL.7: 6 residues within 4Å: Chain A: S.130, E.131, K.137, H.183, A.236, E.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.131, A:E.240 Water bridges: A:A.236 GOL.8: 5 residues within 4Å: Chain A: R.28, G.29, E.86, L.87, S.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.86, A:E.86 GOL.9: 6 residues within 4Å: Chain A: N.102, T.166, Y.168, C.188, L.274 Chain B: Y.282 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.282, A:N.102 Water bridges: A:T.166 GOL.10: 3 residues within 4Å: Chain A: G.175, T.178, L.181 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.175 GOL.11: 6 residues within 4Å: Chain A: E.7, K.10, R.11, H.14, Q.109, Y.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.7, A:K.10, A:H.14 Water bridges: A:R.11 GOL.13: 4 residues within 4Å: Chain B: S.130, S.131, K.141, K.278 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.131, B:K.141, B:K.141, B:K.278 Water bridges: B:S.130, B:S.130 GOL.14: 5 residues within 4Å: Chain B: D.176, T.179, R.180, K.183, P.206 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.176, B:D.176

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.12: 8 residues within 4Å: Chain A: L.225, K.226, G.227, Q.278, L.282 Chain B: P.280, Y.282, Q.283 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:W.281, B:Y.282 Hydrogen bonds: A:Q.278 Salt bridges: A:K.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.H. et al., The Metavinculin Tail Domain Directs Constitutive Interactions with Raver1 and vinculin RNA. J.Mol.Biol. (2012)

Release Date

2012-07-25

Peptides

Ribonucleoprotein PTB-binding 1: A
Vinculin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Ribonucleoprotein PTB-binding 1

Vinculin