SMTL ID : 3vf4.1

Crystal structure of the O-carbamoyltransferase TobZ S530A variant in complex with carbamoyl phosphate and ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.120, H.124, D.143, D.344 Ligands: ADP.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.120, A:H.124, A:D.143, A:D.344

1 x K: POTASSIUM ION(Non-covalent)

K.2: 4 residues within 4Å: Chain A: L.328, T.329, R.330, V.333 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.333

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 21 residues within 4Å: Chain A: H.20, W.77, H.120, H.124, D.143, G.144, Q.145, G.174, F.175, Y.177, E.178, P.191, G.192, L.291, G.316, V.317, L.319, N.320, S.343, D.344 Ligands: FE2.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.144, A:Q.145, A:Q.145, A:E.178, A:E.178, A:G.316, A:N.320, A:D.344, A:D.344 Water bridges: A:G.192, A:G.192 Salt bridges: A:H.20, A:H.20, A:H.120, A:H.124

1 x CP: PHOSPHORIC ACID MONO(FORMAMIDE)ESTER(Non-covalent)

CP.4: 8 residues within 4Å: Chain A: P.423, R.424, A.425, M.479, R.504, N.534, T.535, A.536 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:P.423, A:A.425, A:T.535, A:A.536 Water bridges: A:R.424, A:R.424, A:K.449, A:R.451, A:R.451, A:R.451 Salt bridges: A:R.424, A:R.504

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parthier, C. et al., The O-Carbamoyltransferase TobZ Catalyzes an Ancient Enzymatic Reaction. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2012-01-25

Peptides

O-carbamoyltransferase TobZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O-carbamoyltransferase TobZ