SMTL ID : 3vg0.1

Antibody Fab fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: R.19, N.21, S.66, T.73, T.75, N.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.66, A:S.66, A:T.73, A:N.77, A:N.77

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: L.161, S.163, S.177, T.179 Chain B: T.182, L.183, S.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.177, A:T.179

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain B: W.54, G.56, G.57, S.58, H.103 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.56, B:S.58 Water bridges: B:H.103 Salt bridges: B:H.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carpenter, B. et al., Structure of the human obesity receptor leptin-binding domain reveals the mechanism of leptin antagonism by a monoclonal antibody. Structure (2012)

Release Date

2012-03-14

Peptides

Monoclonal antibody 9F8 Fab fragment L chain: A
Monoclonal antibody 9F8 Fab fragment H chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Monoclonal antibody 9F8 Fab fragment L chain

Monoclonal antibody 9F8 Fab fragment H chain

Related Entries With Identical Sequence