SMTL ID : 3vg6.1

Barium derivative of human LFABP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 16 residues within 4Å: Chain A: S.42, F.53, I.55, F.66, L.74, E.75, T.76, M.77, V.86, L.94, T.96, F.98, T.105, N.114, R.125 Ligands: PLM.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.53, A:F.53, A:F.53, A:I.55, A:F.66, A:L.74, A:V.86, A:L.94, A:T.96, A:F.98, A:T.105 Hydrogen bonds: A:S.42, A:S.127 Water bridges: A:S.42, A:N.114, A:R.125 Salt bridges: A:R.125 PLM.2: 14 residues within 4Å: Chain A: F.18, L.31, K.34, G.35, I.55, A.57, S.59, K.60, M.77, N.114, M.116, F.123, R.125 Ligands: PLM.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.18, A:F.18, A:L.31, A:K.34, A:I.55, A:K.60 Hydrogen bonds: A:N.114 Salt bridges: A:R.125

2 x BA: BARIUM ION(Non-covalent)

BA.3: 2 residues within 4Å: Chain A: T.84, T.97 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.84, A:T.97 BA.4: 2 residues within 4Å: Chain A: S.5, N.92 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.5

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.5: 3 residues within 4Å: Chain A: T.76, M.116 Ligands: IOD.7 Ligand excluded by PLIP IOD.6: 5 residues within 4Å: Chain A: E.43, V.45, K.52, F.53, T.54 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: T.76, I.101 Ligands: IOD.5 Ligand excluded by PLIP IOD.8: 5 residues within 4Å: Chain A: S.14, Q.15, E.16, K.124, I.126 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, A. et al., Utility of anion and cation combinations for phasing of protein structures. J.Struct.Funct.Genom. (2012)

Release Date

2012-06-20

Peptides

Fatty acid-binding protein, liver: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein, liver

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