- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x VHH: 5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 6 residues within 4Å:- Chain A: G.15, N.17, I.34, T.35, A.36, L.123
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.36
- Hydrogen bonds: A:G.15, A:N.17
NAG.6: 5 residues within 4Å:- Chain B: G.15, N.17, I.34, T.35, L.123
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.15, B:N.17
NAG.9: 6 residues within 4Å:- Chain C: K.9, G.15, N.17, I.34, T.35, L.123
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.9, C:G.15, C:N.17
NAG.13: 6 residues within 4Å:- Chain D: G.15, N.17, I.34, T.35, A.36, L.123
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:A.36
- Hydrogen bonds: D:N.17
- Water bridges: D:G.15
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: R.2, K.90, E.91, R.122
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.91, A:R.122
- Water bridges: A:K.90
- Salt bridges: A:R.2, A:K.90
SO4.4: 2 residues within 4Å:- Chain A: R.59, T.60
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.60, A:T.60
- Water bridges: A:Q.61, A:Q.61
- Salt bridges: A:R.59
SO4.7: 2 residues within 4Å:- Chain B: R.59, T.60
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.60, B:T.60
- Salt bridges: B:R.59
SO4.10: 4 residues within 4Å:- Chain C: R.2, K.90, E.91, R.122
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.91
- Salt bridges: C:R.2, C:K.90
SO4.11: 2 residues within 4Å:- Chain C: R.59, T.60
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.60, C:T.60
- Salt bridges: C:R.59
SO4.14: 2 residues within 4Å:- Chain D: R.59, T.60
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.60, D:T.60
- Water bridges: D:Q.61
- Salt bridges: D:R.59
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Terai, T. et al., Rational development of caged-biotin protein-labeling agents and some applications in live cells. Chem.Biol. (2011)
- Release Date
- 2011-12-28
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x VHH: 5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Terai, T. et al., Rational development of caged-biotin protein-labeling agents and some applications in live cells. Chem.Biol. (2011)
- Release Date
- 2011-12-28
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D