- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.76 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x VHI: 5-{(3aS,4S,6aR)-1-[(benzyloxy)carbonyl]-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl}pentanoic acid(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 7 residues within 4Å:- Chain A: K.8, G.14, N.16, I.33, T.34, A.35, L.122
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.8, A:G.14, A:N.16
NAG.6: 5 residues within 4Å:- Chain B: G.14, N.16, I.33, T.34, A.35
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.35
- Hydrogen bonds: B:G.14
- Water bridges: B:N.16
NAG.10: 5 residues within 4Å:- Chain C: G.14, N.16, I.33, T.34, A.35
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:A.35
- Hydrogen bonds: C:G.14, C:N.16
NAG.13: 6 residues within 4Å:- Chain D: G.14, N.16, I.33, T.34, A.35, L.122
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:A.35
- Hydrogen bonds: D:G.14
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: R.1, K.89, E.90, R.121
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.90
- Water bridges: A:K.89, A:E.90
- Salt bridges: A:R.1, A:K.89
SO4.4: 2 residues within 4Å:- Chain A: R.58, T.59
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.59
- Salt bridges: A:R.58
SO4.7: 2 residues within 4Å:- Chain B: K.8, T.18
2 PLIP interactions:2 interactions with chain B- Water bridges: B:K.8
- Salt bridges: B:K.8
SO4.8: 2 residues within 4Å:- Chain B: R.58, T.59
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.59
- Salt bridges: B:R.58
SO4.11: 2 residues within 4Å:- Chain C: R.58, T.59
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.59, C:T.59
- Salt bridges: C:R.58
SO4.14: 2 residues within 4Å:- Chain D: R.58, T.59
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.57, D:T.59
- Salt bridges: D:R.58
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Terai, T. et al., Rational development of caged-biotin protein-labeling agents and some applications in live cells. Chem.Biol. (2011)
- Release Date
- 2011-12-28
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.76 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x VHI: 5-{(3aS,4S,6aR)-1-[(benzyloxy)carbonyl]-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl}pentanoic acid(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Terai, T. et al., Rational development of caged-biotin protein-labeling agents and some applications in live cells. Chem.Biol. (2011)
- Release Date
- 2011-12-28
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D