SMTL ID : 3vhs.1

Crystal structure of UBZ of human WRNIP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: C.9, C.12, H.24 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.9, A:C.12, A:H.24, H2O.1 ZN.3: 4 residues within 4Å: Chain A: H.20 Chain B: C.9, C.12, H.24 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Metal complexes: B:C.9, B:C.12, B:H.24, A:H.20

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: D.26, L.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.29 NA.4: 3 residues within 4Å: Chain A: M.15, M.16 Chain B: D.26 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:Q.6 Hydrogen bonds: B:D.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, N. et al., A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1. Febs J. (2016)

Release Date

2012-10-10

Peptides

ATPase WRNIP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATPase WRNIP1