SMTL ID : 3vi4.2 (1 other biounit)

Crystal structure of alpha5beta1 integrin headpiece in complex with RGD peptide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.90 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
1 x ARG- GLY- ASP- ASN: RGD peptide(Non-covalent)
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
5 x CA: CALCIUM ION(Non-covalent)
5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Nagae, M. et al., Crystal structure of alpha5beta1 integrin ectodomain: Atomic details of the fibronectin receptor. J.Cell Biol. (2012)
Release Date
2012-02-22
Peptides
Integrin alpha-5: A
Integrin beta-1: B
SG/19 Fab fragment (Light chain): C
SG/19 Fab fragment (Heavy chain): D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
C
L
D
H

Integrin alpha-5

Integrin beta-1

SG/19 Fab fragment (Light chain)

SG/19 Fab fragment (Heavy chain)

Related Entries With Identical Sequence

3vi3.1 | 3vi3.2 | 3vi4.1