SMTL ID : 3vi5.1 (1 other biounit)

Human hematopoietic prostaglandin D synthase inhibitor complex structures

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 11 residues within 4Å: Chain A: Y.7, R.13, W.38, K.42, G.48, K.49, I.50, P.51, Q.62, S.63 Chain B: D.96 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:K.49 Hydrogen bonds: A:R.13, A:I.50, A:I.50, A:Q.62, A:S.63, B:D.96 Water bridges: A:I.50, A:Q.62 Salt bridges: A:R.13, A:K.42

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain B: R.11, Q.195, T.196, K.197 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:R.11, B:T.196, B:T.196 Water bridges: B:R.193, B:R.193, B:R.193, B:R.193, B:R.193, B:K.197, B:K.197

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: D.96 Chain B: D.95 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.95, H2O.3, H2O.4, H2O.8, H2O.11

1 x M4M: 1-amino-9,10-dioxo-4-[(4-sulfamoylphenyl)amino]-9,10-dihydroanthracene-2-sulfonic acid(Non-covalent)

M4M.4: 9 residues within 4Å: Chain B: M.10, G.12, R.13, K.49, M.98, W.103, Y.151, C.155, L.198 9 PLIP interactions: 1 interactions with chain A, 8 interactions with chain B Water bridges: A:D.96 Hydrophobic interactions: B:R.13, B:M.98, B:W.103 Hydrogen bonds: B:R.13, B:R.13 pi-Stacking: B:W.103, B:W.103, B:W.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kado, Y. et al., Human hematopoietic prostaglandin D synthase inhibitor complex structures. J.Biochem. (2012)

Release Date

2012-04-18

Peptides

Hematopoietic prostaglandin D synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Hematopoietic prostaglandin D synthase

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