SMTL ID : 3viq.2 (1 other biounit)

Crystal structure of Swi5-Sfr1 complex from fission yeast

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.107, V.108, H.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.108, A:H.109 Salt bridges: A:H.109

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: G.86, Q.87 No protein-ligand interaction detected (PLIP) GOL.3: 5 residues within 4Å: Chain A: V.32, E.33, N.36, E.37, D.38 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.36, A:D.38, A:D.38 Water bridges: A:N.36, A:N.36 GOL.4: 4 residues within 4Å: Chain A: M.63, R.66, F.104 Chain B: K.63 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.66, B:K.63 GOL.5: 5 residues within 4Å: Chain A: K.31, V.32, K.35, E.37 Chain B: H.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.31, A:E.37 Water bridges: A:E.37 GOL.6: 5 residues within 4Å: Chain A: F.104 Chain B: I.56, G.59, M.60, K.63 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.56, B:M.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuwabara, N. et al., Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex. Structure (2012)

Release Date

2012-08-22

Peptides

Swi5-dependent recombination DNA repair protein 1: A
Mating-type switching protein swi5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Swi5-dependent recombination DNA repair protein 1

Mating-type switching protein swi5

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