SMTL ID : 3viu.1

Crystal structure of PurL from thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: Y.44, L.51, G.66, E.67, K.83, E.85, D.109, D.259, D.485, L.487, S.521, G.522, N.523, V.524 Ligands: PEG.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.44, A:G.66, A:E.85, A:D.259, A:D.485, A:G.522, A:N.523 Water bridges: A:G.66, A:N.68, A:A.262 Salt bridges: A:K.83, A:K.83

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: H.41, S.86, H.87, N.88, H.89, P.90, S.525 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.86, A:S.86, A:N.88, A:H.89, A:S.525, A:S.525 Salt bridges: A:H.41

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.430, N.472, D.620 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.430, A:D.620, H2O.223, H2O.290, H2O.291

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 6 residues within 4Å: Chain A: C.42, A.43, Y.44, R.48, L.51 Ligands: ADP.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.51, A:A.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, S. et al., Structure of N-formylglycinamide ribonucleotide amidotransferase II (PurL) from Thermus thermophilus HB8. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-01-18

Peptides

Phosphoribosylformylglycinamidine synthase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosylformylglycinamidine synthase 2