SMTL ID : 3viv.1

1510-N membrane-bound stomatin-specific protease K138A mutant in complex with a substrate peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-2-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: G.141, L.163, G.166, I.168, E.169, K.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.141, A:L.163, A:E.169, A:E.169 GOL.5: 6 residues within 4Å: Chain B: G.141, L.163, G.166, I.168, E.169, K.188 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.163, B:E.169, B:E.169, B:K.188

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 6 residues within 4Å: Chain A: A.39, E.40, K.67, I.68, P.69, V.196 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.67 IMD.3: 6 residues within 4Å: Chain A: V.12, A.13, Q.14, E.45, Y.207, L.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.14, A:L.208 Water bridges: A:Q.14 pi-Stacking: A:Y.207 IMD.6: 6 residues within 4Å: Chain B: A.39, E.40, K.67, I.68, P.69, V.196 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.67

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: R.194, V.196, T.197 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, H. et al., Crystal structure of a membrane stomatin-specific protease in complex with a substrate Peptide. Biochemistry (2012)

Release Date

2012-05-23

Peptides

441aa long hypothetical nfeD protein: AB
PH STOMATIN PH1511: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

441aa long hypothetical nfeD protein

PH STOMATIN PH1511

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