SMTL ID : 3vkf.1 (4 other biounits)

Crystal Structure of Neurexin 1beta/Neuroligin 1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 1 residues within 4Å: Chain A: N.494 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: R.281, I.282, T.285, N.290 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.282 Hydrogen bonds: A:R.281, A:T.285 NAG.3: 5 residues within 4Å: Chain B: R.281, I.282, T.285, N.290, S.292 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.282 Hydrogen bonds: B:R.281

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: G.343 Chain C: D.56, V.73, I.125, N.127 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.56, C:V.73, C:I.125 CA.5: 4 residues within 4Å: Chain D: D.56, V.73, I.125, N.127 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.56, D:V.73, D:I.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, H. et al., Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin. Cell Rep (2012)

Release Date

2012-08-01

Peptides

Neuroligin-1: AB
Neurexin-1-beta: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Neuroligin-1

Neurexin-1-beta

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