SMTL ID : 3vm4.1

Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: Y.50, R.57, V.75, Q.76, H.83, K.87, F.90, M.94, N.230, V.231, P.234, T.235, A.237, I.238, Y.241, F.279, F.280, V.283, L.308, Q.342, G.343, G.350, H.351, C.353, P.354, G.355, I.358, V.359 Ligands: IZP.2 24 PLIP interactions: 23 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:V.75, A:Q.76, A:F.90, A:P.234, A:I.238, A:I.238, A:F.279, A:F.279, A:F.280, A:F.280, A:F.280, A:L.308, A:Q.342, A:P.354, A:I.358 Hydrogen bonds: A:Y.50 Water bridges: A:H.351, A:H.351 Salt bridges: A:R.57, A:H.83, A:K.87, A:H.351 Metal complexes: A:C.353, H2O.6

1 x IZP: (2R)-2-[4-(2-methylpropyl)phenyl]propanoic acid(Non-covalent)

IZP.2: 8 residues within 4Å: Chain A: L.69, F.161, R.233, P.234, A.237, F.279, F.280 Ligands: HEM.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.161, A:A.237, A:F.279, A:F.280 Salt bridges: A:R.233

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 6 residues within 4Å: Chain A: M.91, G.92, M.94, T.95, Y.348, W.357 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.94, A:T.95, A:Y.348, A:W.357 Hydrogen bonds: A:M.91 MRD.4: 5 residues within 4Å: Chain A: H.247, T.251, F.276, Y.277, F.324 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.276, A:F.276, A:F.324 Hydrogen bonds: A:T.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujishiro, T. et al., Chiral-substrate-assisted stereoselective epoxidation catalyzed by H2O2-dependent cytochrome P450SP alpha. Chem Asian J (2012)

Release Date

2012-05-09

Peptides

Fatty acid alpha-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid alpha-hydroxylase