SMTL ID : 3vmf.1

Archaeal protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 24 residues within 4Å: Chain A: H.17, V.18, D.19, H.20, G.21, K.22, S.23, T.24, S.55, F.56, A.59, I.73, T.74, A.94, P.95, G.96, N.155, K.156, D.158, A.159, S.196, A.197, W.198 Ligands: MG.2 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:D.19, A:H.20, A:G.21, A:K.22, A:S.23, A:T.24, A:T.24, A:S.55, A:S.55, A:T.74, A:G.96, A:N.155, A:K.156, A:K.156, A:A.197, A:W.198 Water bridges: A:D.19, A:D.19, A:S.23, A:S.23, A:T.74, A:T.74, A:T.74, A:H.97, A:R.121 Salt bridges: A:K.22, A:K.22, A:D.158

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.23, D.63, T.74 Ligands: GTP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.23, A:T.74, H2O.3, H2O.3

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.280, R.303, G.304 Chain B: E.188, R.189 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.304, B:R.189 Salt bridges: A:R.280, B:R.189 Water bridges: B:R.189, B:R.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobayashi, K. et al., Structural basis for translation termination by archaeal RF1 and GTP-bound EF1alpha complex. Nucleic Acids Res. (2012)

Release Date

2012-07-25

Peptides

Elongation factor 1-alpha: A
Peptide chain release factor subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Elongation factor 1-alpha

Peptide chain release factor subunit 1

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