SMTL ID : 3vnb.1

Structural insights into small RNA sorting and mRNA binding by Arabidopsis Ago domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.99, K.103, S.114, Q.115, C.116, K.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.115, A:C.116 Salt bridges: A:K.103, A:K.140 SO4.2: 4 residues within 4Å: Chain A: S.20, R.21, Q.22, P.91 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.21, A:Q.22, A:Q.22, A:D.92 Water bridges: A:S.20, A:S.20 SO4.3: 4 residues within 4Å: Chain A: H.121, K.124, S.126, Y.129 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.126 Water bridges: A:S.126, A:S.126, A:Q.128 Salt bridges: A:H.121, A:K.124 SO4.4: 4 residues within 4Å: Chain A: R.21, R.58, P.59, E.60 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.60, A:E.60 Water bridges: A:R.21 Salt bridges: A:R.21, A:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zha, X. et al., Structural insights into small RNA sorting and mRNA target binding by Arabidopsis Argonaute Mid domains. Febs Lett. (2012)

Release Date

2012-10-10

Peptides

Protein argonaute 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute 1