SMTL ID : 3vo3.1

Crystal Structure of the Kinase domain of Human VEGFR2 with imidazo[1,2-b]pyridazine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x 0KF: N-[3-({2-[(cyclopropylcarbonyl)amino]imidazo[1,2-b]pyridazin-6-yl}oxy)phenyl]-1,3-dimethyl-1H-pyrazole-5-carboxamide(Non-covalent)

0KF.1: 22 residues within 4Å: Chain A: L.37, V.45, A.63, K.65, E.82, I.85, L.86, V.95, V.96, V.111, V.113, E.114, F.115, C.116, K.117, F.118, G.119, L.182, I.191, C.192, D.193, F.194 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.37, A:V.45, A:A.63, A:K.65, A:E.82, A:I.85, A:V.113, A:V.113, A:F.115, A:L.182, A:D.193 Hydrogen bonds: A:E.82, A:E.82, A:C.116, A:C.116, A:D.193

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: W.243, S.247, P.275, D.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.276 Water bridges: A:D.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyamoto, N. et al., Discovery of N-[5-({2-[(cyclopropylcarbonyl)amino]imidazo[1,2-b]pyridazin-6-yl}oxy)-2-methylphenyl]-1,3-dimethyl-1H-pyrazole-5-carboxamide (TAK-593), a highly potent VEGFR2 kinase inhibitor. Bioorg.Med.Chem. (2013)

Release Date

2013-03-06

Peptides

Vascular endothelial growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vascular endothelial growth factor receptor 2

Related Entries With Identical Sequence