SMTL ID : 3vp9.1

Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

8 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.1: 4 residues within 4Å: Chain A: R.56, V.59, Y.60 Chain B: R.62 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.58, B:T.58 DIO.2: 7 residues within 4Å: Chain A: R.62 Chain B: V.59, Y.60, E.63, R.67 Chain C: L.80 Chain D: K.81 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.67 DIO.3: 8 residues within 4Å: Chain A: H.66, M.69, K.70, Y.73 Chain B: H.66, M.69, K.70, Y.73 No protein-ligand interaction detected (PLIP) DIO.4: 3 residues within 4Å: Chain B: N.57, Y.60, E.61 No protein-ligand interaction detected (PLIP) DIO.5: 4 residues within 4Å: Chain C: R.56, V.59, Y.60 Chain D: R.62 No protein-ligand interaction detected (PLIP) DIO.6: 7 residues within 4Å: Chain A: L.80 Chain B: K.81 Chain C: R.62 Chain D: V.59, Y.60, E.63, R.67 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.67 DIO.7: 8 residues within 4Å: Chain C: H.66, M.69, K.70, Y.73 Chain D: H.66, M.69, K.70, Y.73 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.66 DIO.8: 3 residues within 4Å: Chain D: N.57, Y.60, E.61 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsumura, H. et al., Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications. J.Biol.Chem. (2012)

Release Date

2012-06-13

Peptides

General transcriptional corepressor TUP1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

General transcriptional corepressor TUP1