SMTL ID : 3vpc.1

ArgX from Sulfolobus tokodaii complexed with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-tetramer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: K.87, I.125, K.127, G.131, S.132, W.133, G.134, R.135, V.137, Q.167, E.168, Y.169, I.170, D.176, R.192, W.199, R.200, A.201, N.202, N.249, E.250 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.127, A:S.132, A:G.134, A:R.135, A:Q.167, A:I.170, A:D.176, A:R.192, A:A.201, A:N.202, A:N.202, A:N.249 Water bridges: A:D.237 Salt bridges: A:K.87, A:K.87, A:K.127 ADP.2: 19 residues within 4Å: Chain B: K.87, I.125, K.127, G.131, S.132, W.133, G.134, V.137, Q.167, E.168, Y.169, I.170, D.176, W.199, R.200, A.201, N.202, N.249, E.250 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:K.127, B:S.132, B:G.134, B:Q.167, B:I.170, B:D.176, B:A.201, B:N.202, B:N.202, B:N.249, B:E.250, B:E.250 Water bridges: B:W.133, B:W.133, B:D.237, B:D.237, B:D.237 Salt bridges: B:K.87, B:K.87, B:K.127 ADP.3: 18 residues within 4Å: Chain C: K.87, I.125, K.127, G.131, S.132, W.133, G.134, R.135, V.137, Q.167, E.168, Y.169, I.170, R.192, R.200, A.201, N.249, E.250 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:K.127, C:G.131, C:S.132, C:G.134, C:R.135, C:Q.167, C:E.168, C:I.170, C:R.192, C:A.201, C:N.249 Water bridges: C:G.131, C:W.133, C:D.176, C:D.176, C:D.237, C:E.250 Salt bridges: C:K.87, C:K.87, C:K.127 ADP.4: 17 residues within 4Å: Chain D: K.87, I.125, K.127, G.131, S.132, W.133, G.134, V.137, Q.167, E.168, Y.169, I.170, R.200, A.201, N.202, N.249, E.250 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:K.127, D:S.132, D:G.134, D:Q.167, D:I.170, D:A.201, D:N.202, D:N.249 Water bridges: D:W.133, D:W.133 Salt bridges: D:K.87, D:K.87, D:K.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouchi, T. et al., Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus. Nat.Chem.Biol. (2013)

Release Date

2013-02-27

Peptides

Putative acetylornithine deacetylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative acetylornithine deacetylase

Related Entries With Identical Sequence