SMTL ID : 3vpi.1

Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

9 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 2 residues within 4Å: Chain A: R.157 Ligands: FMT.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.157 Water bridges: A:R.157 FMT.2: 4 residues within 4Å: Chain A: S.80, W.81, Y.163, S.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.164 Water bridges: A:Y.163, A:S.164 FMT.3: 4 residues within 4Å: Chain A: L.61, G.62, V.63, S.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.61 FMT.4: 2 residues within 4Å: Chain A: P.171, A.173 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.171 FMT.5: 5 residues within 4Å: Chain A: L.84, A.85, S.86, L.158, Y.160 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.85, A:G.87 FMT.6: 4 residues within 4Å: Chain A: L.104, R.157, N.159 Ligands: FMT.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.157, A:N.159 FMT.7: 3 residues within 4Å: Chain A: P.66, R.67 Ligands: FMT.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.67 FMT.8: 2 residues within 4Å: Chain A: A.136, K.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.144 FMT.9: 2 residues within 4Å: Chain A: R.67 Ligands: FMT.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.67, A:R.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, J. et al., Structural insights into the Pseudomonas aeruginosa type VI virulence effector Tse1 bacteriolysis and self-protection mechanisms. J.Biol.Chem. (2012)

Release Date

2012-06-27

Peptides

type VI secretion exported 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

type VI secretion exported 1

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