SMTL ID : 3vpl.1

Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x BXF- XYP- XYP: beta-D-xylopyranose-(1-3)-beta-D-xylopyranose-(1-3)-2-deoxy-2-fluoro-beta-D-xylopyranose

BXF-XYP-XYP.1: 16 residues within 4Å: Chain A: Q.17, Y.39, G.41, D.46, A.56, N.59, N.80, Y.115, E.116, F.184, E.212, W.272, R.277, W.278, W.287 Ligands: BXF-XYP-XYP.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.17, A:N.80, A:R.277 Water bridges: A:R.277, A:G.41, A:D.46, A:D.46, A:D.46, A:N.59, A:N.59, A:S.78, A:R.277

1 x BXF- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-3)-2-deoxy-2-fluoro-beta-D-xylopyranose(Non-covalent)

BXF-XYP-XYP.2: 10 residues within 4Å: Chain A: N.80, G.81, W.121, N.122, R.277, W.278, E.284, W.287 Ligands: BXF-XYP-XYP.1, DNX.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.284, A:N.80 Water bridges: A:R.277, A:R.277, A:S.78, A:N.122

1 x DNX: 3,4-dinitrophenol(Non-covalent)

DNX.3: 8 residues within 4Å: Chain A: Y.158, Q.216, P.229, A.230, E.284, G.285, W.287 Ligands: BXF-XYP-XYP.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakaguchi, K. et al., The crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 beta-1,3-xylanase at 1.2 A resolution. To be Published

Release Date

2013-03-06

Peptides

Beta-1,3-xylanase XYL4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-1,3-xylanase XYL4

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