SMTL ID : 3vq6.1

HIV-1 IN core domain in complex with (1-methyl-5-phenyl-1H-pyrazol-4-yl)methanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 4 residues within 4Å: Chain A: C.11, H.13, E.38 Ligands: CD.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.11, A:H.13, A:E.38, A:E.38, H2O.2 CD.2: 4 residues within 4Å: Chain A: C.11, E.38, D.62 Ligands: CD.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.11, A:E.38, A:D.62, H2O.1, H2O.1 CD.5: 4 residues within 4Å: Chain B: C.11, E.38, D.62 Ligands: CD.6 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.11, B:E.38, B:D.62, H2O.2, H2O.2 CD.6: 4 residues within 4Å: Chain B: C.11, H.13, E.38 Ligands: CD.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.11, B:H.13, B:E.38, H2O.2

1 x BCK: (1-methyl-5-phenyl-1H-pyrazol-4-yl)methanol(Non-covalent)

BCK.3: 3 residues within 4Å: Chain A: D.62, G.86, P.88 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.88

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.133, I.137 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wielens, J. et al., Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?. J Biomol Screen (2013)

Release Date

2013-01-30

Peptides

POL polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POL polyprotein

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