SMTL ID : 3vqg.1

Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x VAL- THR- LEU- VAL: C-terminal peptide from Immunoglobulin superfamily member 5(Non-covalent)

VAL-THR-LEU-VAL.1: 11 residues within 4Å: Chain A: Q.23, L.24, G.25, I.26, K.27, L.28, V.29, F.40, P.73, A.77, I.80 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.26, A:K.27, A:V.29, A:F.40, A:I.80 Hydrogen bonds: A:L.24, A:G.25, A:I.26, A:I.26, A:I.26, A:L.28, A:L.28 Water bridges: A:R.30

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: I.14, R.86 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.16 Salt bridges: A:R.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akiyoshi, Y. et al., Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase. To be Published

Release Date

2013-03-27

Peptides

E3 ubiquitin-protein ligase LNX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase LNX

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