SMTL ID : 3vqi.1 (4 other biounits)

Crystal structure of Kluyveromyces marxianus Atg5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 9 residues within 4Å: Chain A: Y.47, L.48, G.49, W.85, E.86, L.132, Q.138, I.139, Y.142 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.49, A:Q.138

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: C.38, H.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.39 Salt bridges: A:H.39 SO4.3: 1 residues within 4Å: Chain A: K.124 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.124 SO4.4: 2 residues within 4Å: Chain A: K.124, R.127 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.124, A:R.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamaguchi, M. et al., Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate. Structure (2012)

Release Date

2012-08-01

Peptides

Atg5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Atg5

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