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SMTL ID : 3vsa.3
(2 other biounits)
Crystal Structure of O-phosphoserine sulfhydrylase without acetate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.07 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
15 residues within 4Å:
Chain A:
K.127
,
N.155
,
S.259
,
L.260
,
G.261
,
T.262
,
S.263
,
G.264
,
H.265
,
G.295
,
I.296
,
S.341
,
P.368
,
D.369
,
Y.374
14
PLIP interactions
:
14 interactions with chain A
Hydrophobic interactions:
A:K.127
,
A:I.296
,
A:D.369
Hydrogen bonds:
A:N.155
,
A:S.259
,
A:G.261
,
A:T.262
,
A:S.263
,
A:G.264
,
A:H.265
,
A:S.341
Water bridges:
A:M.266
Salt bridges:
A:K.127
,
A:H.265
PLP.3:
15 residues within 4Å:
Chain B:
K.127
,
N.155
,
S.259
,
L.260
,
G.261
,
T.262
,
S.263
,
G.264
,
H.265
,
G.295
,
I.296
,
S.341
,
P.368
,
D.369
,
Y.374
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:K.127
,
B:I.296
,
B:P.368
Hydrogen bonds:
B:N.155
,
B:S.259
,
B:G.261
,
B:T.262
,
B:S.263
,
B:G.264
,
B:H.265
,
B:S.341
Water bridges:
B:Q.224
,
B:N.230
,
B:T.262
,
B:M.266
Salt bridges:
B:K.127
,
B:H.265
1 x
MPD
:
(4S)-2-METHYL-2,4-PENTANEDIOL
(Non-functional Binders)
MPD.2:
11 residues within 4Å:
Chain A:
M.82
,
G.94
,
K.95
,
P.96
,
T.97
,
P.98
,
Y.119
Chain B:
M.82
,
F.90
,
G.94
,
Y.119
4
PLIP interactions
:
2 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:P.98
,
B:F.90
,
B:Y.119
Hydrogen bonds:
A:G.94
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Nakamura, T. et al., Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1. J.Mol.Biol. (2012)
Release Date
2012-05-16
Peptides
Protein CysO:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Protein CysO
Related Entries With Identical Sequence
1wkv.1
|
3vsa.1
|
3vsa.2
|
5b36.1
|
5b36.2
|
5b3a.1
|
5b3a.2
Cartoon
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