SMTL ID : 3vsi.1

Crystal structure of native 1,6-APD (2-Animophenol-1,6-dioxygenase) complex with 4-Nitrocatechol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain B: H.13, H.62, Y.129, E.251 Ligands: 4NC.2 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.13, B:H.62, B:E.251 FE.3: 5 residues within 4Å: Chain D: H.13, H.62, Y.129, E.251 Ligands: 4NC.4 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.13, D:H.62, D:E.251, D:E.251

2 x 4NC: 4-NITROCATECHOL(Non-covalent)

4NC.2: 14 residues within 4Å: Chain B: H.13, P.14, P.15, H.16, H.62, F.86, Y.129, T.192, H.195, E.251, V.279, I.280, T.282 Ligands: FE.1 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.14, B:T.282 4NC.4: 13 residues within 4Å: Chain D: H.13, P.15, H.16, H.62, F.86, Y.129, T.192, H.195, E.251, V.279, I.280, T.282 Ligands: FE.3 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:T.192, D:T.282 Hydrogen bonds: D:Y.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, D.F. et al., Structures of aminophenol dioxygenase in complex with intermediate, product and inhibitor. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-01-16

Peptides

2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit: AC
2-amino-5-chlorophenol 1,6-dioxygenase beta subunit: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit

2-amino-5-chlorophenol 1,6-dioxygenase beta subunit

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