SMTL ID : 3vst.1

The complex structure of XylC with Tris

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 12 residues within 4Å: Chain A: W.113, P.233, Q.289, H.352, E.353, K.358, H.360, W.380, D.382, W.383, E.405, R.450 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.353, A:K.358, A:W.383, A:E.405, A:R.450 Water bridges: A:W.113 TRS.2: 12 residues within 4Å: Chain B: W.113, P.233, Q.289, H.352, E.353, K.358, H.360, W.380, D.382, W.383, E.405, R.450 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.353, B:K.358, B:W.383, B:E.405, B:R.450 Water bridges: B:W.113, B:H.352 TRS.3: 12 residues within 4Å: Chain C: W.113, P.233, Q.289, H.352, E.353, K.358, H.360, W.380, D.382, W.383, E.405, R.450 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.353, C:K.358, C:D.382, C:W.383, C:R.450 Water bridges: C:W.113 TRS.4: 12 residues within 4Å: Chain D: W.113, P.233, Q.289, H.352, E.353, K.358, H.360, W.380, D.382, W.383, E.405, R.450 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.353, D:K.358, D:W.383, D:E.405, D:R.450 Water bridges: D:W.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.H. et al., The substrate/product-binding modes of a novel GH120 beta-xylosidase (XylC) from Thermoanaerobacterium saccharolyticum JW/SL-YS485. Biochem.J. (2012)

Release Date

2013-02-27

Peptides

Xylosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Xylosidase

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