SMTL ID : 3vtk.1

THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 IN COMPLEX WITH ADP AND 5-IODO-DEOXYURIDINE-MONOPHOSPHATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: H.25, G.26, M.27, G.28, K.29, T.30, T.31, R.179, R.183, K.186, R.187, Q.298, S.299, P.300, C.303 Ligands: 5IU.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.26, A:M.27, A:G.28, A:K.29, A:T.30, A:T.31, A:T.31, A:T.31, A:R.179, A:R.183, A:R.183, A:K.186, A:Q.298 Water bridges: A:T.30, A:R.189 Salt bridges: A:K.29 pi-Cation interactions: A:R.183, A:R.183 ADP.3: 16 residues within 4Å: Chain B: H.25, G.26, M.27, G.28, K.29, T.30, T.31, R.179, R.183, K.186, R.187, Q.298, S.299, P.300, C.303 Ligands: 5IU.4 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:G.26, B:M.27, B:G.28, B:K.29, B:T.30, B:T.31, B:T.31, B:T.31, B:R.179, B:R.183, B:R.183, B:K.186, B:Q.298 Water bridges: B:T.30, B:R.189 Salt bridges: B:K.29 pi-Cation interactions: B:R.183, B:R.183

2 x 5IU: 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE(Non-covalent)

5IU.2: 16 residues within 4Å: Chain A: H.25, G.26, K.29, E.50, I.64, I.67, Y.68, Q.92, M.95, R.130, A.134, A.135, Y.139, R.189, E.192 Ligands: ADP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.25 Hydrogen bonds: A:G.26, A:T.30, A:E.50, A:Y.68, A:Q.92, A:Q.92, A:R.130, A:R.189, A:E.192 Water bridges: A:R.143 Salt bridges: A:K.29 pi-Stacking: A:Y.139 5IU.4: 16 residues within 4Å: Chain B: H.25, G.26, K.29, E.50, I.64, I.67, Y.68, Q.92, M.95, R.130, A.134, A.135, Y.139, R.189, E.192 Ligands: ADP.3 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:H.25 Hydrogen bonds: B:G.26, B:T.30, B:E.50, B:Y.68, B:Q.92, B:Q.92, B:R.130, B:R.189, B:E.192 Water bridges: B:R.143 Salt bridges: B:K.29 pi-Stacking: B:Y.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wild, K. et al., The structures of thymidine kinase from herpes simplex virus type 1 in complex with substrates and a substrate analogue. Protein Sci. (1997)

Release Date

1997-10-22

Peptides

THYMIDINE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

THYMIDINE KINASE

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