SMTL ID : 3vuf.1

Crystal Structure of Rice Granule bound Starch Synthase I Catalytic Domain in Complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: T.25, G.26, G.27, N.192, R.335, Q.339, K.340, G.363, K.389, F.390, N.391, L.416, I.417, Q.420 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.27, A:N.192, A:Q.339, A:K.389, A:Q.420, A:Q.420 Water bridges: A:K.340, A:L.416 Salt bridges: A:R.335, A:R.335, A:K.340

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.194, Y.195, Q.196, G.197, R.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.196, A:G.197, A:R.198, A:R.198 Salt bridges: A:R.198 SO4.3: 5 residues within 4Å: Chain A: K.374, R.385, A.386, V.387, V.388 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.388 Salt bridges: A:K.374, A:R.385, A:K.389 SO4.4: 4 residues within 4Å: Chain A: R.52, Q.55, R.78, F.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.55 Salt bridges: A:R.52, A:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Momma, M. et al., Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis. Biosci.Biotechnol.Biochem. (2012)

Release Date

2012-09-05

Peptides

Granule-bound starch synthase 1, chloroplastic/amyloplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Granule-bound starch synthase 1, chloroplastic/amyloplastic

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