SMTL ID : 3vus.2 (1 other biounit)

Escherichia coli PgaB N-terminal domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.14, D.73, D.74, H.143, H.148 Ligands: ACT.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.74, A:H.143, A:H.148, ACT.2

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 12 residues within 4Å: Chain A: H.14, D.73, D.74, H.143, H.148, W.209, P.210, Y.211, G.212, L.233, R.248 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.233 Hydrogen bonds: A:D.73, A:Y.211 Salt bridges: A:H.14, A:H.143, A:H.148

1 x HG: MERCURY (II) ION(Non-covalent)

HG.3: 1 residues within 4Å: Chain A: H.57 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishiyama, T. et al., The structure of the deacetylase domain of Escherichia coli PgaB, an enzyme required for biofilm formation: a circularly permuted member of the carbohydrate esterase 4 family. Acta Crystallogr.,Sect.D (2013)

Release Date

2012-11-14

Peptides

Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase

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