SMTL ID : 3vv3.1 (2 other biounits)

Crystal structure of deseasin MCP-01 from Pseudoalteromonas sp. SM9913

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.70, D.77, D.79, N.81, Y.83, D.86 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.70, A:D.77, A:D.79, A:Y.83, A:D.86 CA.2: 4 residues within 4Å: Chain A: D.26, D.28, D.30 Ligands: CA.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.26, A:D.30, H2O.1, H2O.1, H2O.2 CA.3: 3 residues within 4Å: Chain A: D.26, D.30 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.26, A:D.26, A:D.30, A:D.30, H2O.5 CA.4: 6 residues within 4Å: Chain A: E.70, I.71, D.74, I.76, N.78, D.85 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.70, A:I.71, A:D.74, A:I.76, A:D.85 CA.5: 3 residues within 4Å: Chain B: D.26, D.30 Ligands: CA.6 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.26, B:D.30, H2O.19, H2O.19, H2O.21 CA.6: 4 residues within 4Å: Chain B: D.26, D.28, D.30 Ligands: CA.5 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.26, B:D.30, H2O.17, H2O.18, H2O.18 CA.7: 6 residues within 4Å: Chain B: E.70, D.77, D.79, N.81, Y.83, D.86 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.70, B:D.77, B:D.79, B:Y.83, B:D.86 CA.8: 6 residues within 4Å: Chain B: E.70, I.71, D.74, I.76, N.78, D.85 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.70, B:I.71, B:D.74, B:I.76, B:D.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ran, L.Y. et al., Structural and mechanistic insights into collagen degradation by a bacterial collagenolytic serine protease in the subtilisin family. Mol. Microbiol. (2013)

Release Date

2013-08-07

Peptides

Deseasin MCP-01: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Deseasin MCP-01

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