- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- monomer
- Ligands
- 1 x VPX: ethyl [(1R,3aR,4aR,6R,8aR,9S,9aS)-9-{(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl}-1-methyl-3-oxododecahydronaphtho[2,3-c]fur an-6-yl]carbamate(Non-covalent)
- 9 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.2: 6 residues within 4Å:- Chain A: F.119, Y.124, I.202, V.206, R.213
- Ligands: OLC.3
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.202, A:V.206
- Hydrogen bonds: A:S.210, A:R.213, A:R.213
OLC.3: 10 residues within 4Å:- Chain A: F.119, L.120, Y.124, A.194, F.198, V.199, I.202, I.203, V.206
- Ligands: OLC.2
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:A.194, A:F.198, A:V.199, A:I.202, A:I.203
OLC.4: 7 residues within 4Å:- Chain A: F.31, V.32, P.74, I.77, S.78, F.81, S.82
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.31, A:V.32, A:P.74, A:I.77
- Hydrogen bonds: A:F.81
OLC.5: 11 residues within 4Å:- Chain A: L.37, M.40, V.44, F.45, I.439, C.442, P.445, L.446, Y.448, Y.449, S.452
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.37, A:L.446
- Hydrogen bonds: A:S.452, A:S.452
OLC.6: 8 residues within 4Å:- Chain A: W.18, I.400, P.405, E.424, A.425, F.428, L.432, C.433
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.400, A:L.432
- Hydrogen bonds: A:W.18
OLC.7: 10 residues within 4Å:- Chain A: F.197, I.400, G.404, P.405, V.408, T.420, T.423, A.425, C.433
- Ligands: VPX.1
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.197, A:I.400, A:V.408
- Hydrogen bonds: A:T.420, A:T.420
OLC.8: 7 residues within 4Å:- Chain A: V.57, H.61, S.138, L.142, W.145, A.146, V.153
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.142, A:A.146, A:V.153
- Salt bridges: A:H.61
OLC.9: 10 residues within 4Å:- Chain A: L.147, A.150, G.151, P.154, K.158, L.181, Y.185, Y.188, F.189, F.192
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.147, A:P.154, A:L.181, A:Y.188, A:F.189
- Hydrogen bonds: A:K.158, A:K.158
OLC.10: 7 residues within 4Å:- Chain A: Y.58, T.112, R.136, F.139, T.140, A.143, L.147
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:T.112, A:F.139, A:A.143, A:L.147
- Hydrogen bonds: A:T.140
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, C. et al., High-resolution crystal structure of human protease-activated receptor 1. Nature (2012)
- Release Date
- 2012-12-12
- Peptides
- Proteinase-activated receptor 1, Lysozyme: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- monomer
- Ligands
- 1 x VPX: ethyl [(1R,3aR,4aR,6R,8aR,9S,9aS)-9-{(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl}-1-methyl-3-oxododecahydronaphtho[2,3-c]fur an-6-yl]carbamate(Non-covalent)
- 9 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, C. et al., High-resolution crystal structure of human protease-activated receptor 1. Nature (2012)
- Release Date
- 2012-12-12
- Peptides
- Proteinase-activated receptor 1, Lysozyme: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.