SMTL ID : 3vw9.1

Human Glyoxalase I with an N-hydroxypyridone inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.37, E.103 Chain B: H.130, E.176 Ligands: HPJ.5 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.103, B:H.130, B:E.176 ZN.4: 5 residues within 4Å: Chain A: H.130, E.176 Chain B: Q.37, E.103 Ligands: HPJ.3 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.130, A:E.176, B:E.103

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 2 residues within 4Å: Chain A: S.24, D.25 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.25 Water bridges: A:S.24, A:S.24 Salt bridges: A:D.25

2 x HPJ: 1-hydroxy-6-[1-(3-methoxypropyl)-1H-pyrrolo[2,3-b]pyridin-5-yl]-4-phenylpyridin-2(1H)-one(Non-covalent)

HPJ.3: 21 residues within 4Å: Chain A: H.130, V.153, K.154, M.161, L.164, F.166, W.174, E.176, M.183, L.186, M.187 Chain B: Q.37, C.64, F.66, M.69, F.71, L.73, F.75, I.92, E.103 Ligands: ZN.4 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:M.161, A:L.164, A:L.186, B:L.73, B:F.75, B:I.92 pi-Stacking: A:F.166, A:F.166, B:F.66 Hydrogen bonds: B:Q.37 HPJ.5: 19 residues within 4Å: Chain A: Q.37, C.64, F.66, F.71, L.73, F.75, I.92, L.96, E.103 Chain B: H.130, V.153, M.161, F.166, W.174, E.176, M.183, A.184, L.186 Ligands: ZN.1 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.73, A:F.75, A:I.92, A:L.96, B:M.183, B:L.186 Hydrogen bonds: A:Q.37 pi-Stacking: A:F.66, B:F.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chiba, T. et al., Design and evaluation of azaindole-substituted N-hydroxypyridones as glyoxalase I inhibitors. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-12-12

Peptides

Lactoylglutathione lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lactoylglutathione lyase

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