SMTL ID : 3vwd.1

Crystal structure of alpha-tubulin acetyltransferase domain of human Mec-17 in complex with acetoacetyl-CoA (P21212 form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.1: 26 residues within 4Å: Chain A: Q.62, I.125, L.126, D.127, F.128, Y.129, I.130, Q.135, R.136, H.137, G.138, H.139, G.140, R.141, I.160, D.161, R.162, P.163, S.164, K.166, L.167, K.169, F.170, K.173, H.174 Ligands: CL.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:F.128, A:I.160, A:L.167 Hydrogen bonds: A:F.128, A:I.130, A:R.136, A:G.138, A:H.139, A:G.140, A:R.141, A:S.164, A:K.169 Water bridges: A:R.136, A:R.136, A:R.136, A:R.136, A:R.136, A:H.137, A:H.137, A:K.166, A:K.166, A:K.173, A:K.173, A:K.173, A:K.173 Salt bridges: A:R.136, A:K.173, A:H.174 pi-Cation interactions: A:R.136

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: A.61, E.132, Q.135, K.166 Ligands: ACO.1 Ligand excluded by PLIP CL.3: 7 residues within 4Å: Chain A: I.68, T.69, S.70, R.73, M.74, H.79, K.102 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: G.192, F.193, F.194 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: V.120, F.193, F.194, A.195, H.196, Q.197 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.196, A:Q.197 Water bridges: A:E.121, A:F.193, A:F.193, A:A.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuzawa, S. et al., Crystal structure of alpha-tubulin acetyltransferase domain of human Mec-17. To be Published

Release Date

2013-08-28

Peptides

Alpha-tubulin N-acetyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-tubulin N-acetyltransferase

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