- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.6: 11 residues within 4Å:- Chain A: S.112, Y.215, G.316, F.317, W.331, I.343, G.344, I.345, Y.370, H.375
- Ligands: GOL.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.112, A:Y.215, A:I.345
- Water bridges: A:I.343, A:Q.348
MES.7: 7 residues within 4Å:- Chain A: Y.13, P.30, R.33, W.34, H.38
- Chain B: R.99, G.101
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Water bridges: A:W.34, B:R.99, B:R.99
- Salt bridges: A:H.38, B:R.99
MES.8: 6 residues within 4Å:- Chain A: Q.69, L.70, P.71, D.72, R.76, D.384
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.72
- Water bridges: A:D.72
- Salt bridges: A:R.76, A:D.384
MES.17: 11 residues within 4Å:- Chain B: S.112, Y.215, G.316, F.317, W.331, I.343, G.344, I.345, Y.370, H.375
- Ligands: GOL.16
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.112, B:Y.215, B:Y.215, B:I.345
- Water bridges: B:I.343, B:Q.348, B:H.375
MES.18: 7 residues within 4Å:- Chain A: R.99, G.101
- Chain B: Y.13, P.30, R.33, W.34, H.38
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Water bridges: A:R.99, A:R.99, B:W.34
- Salt bridges: A:R.99, B:H.38
MES.19: 6 residues within 4Å:- Chain B: Q.69, L.70, P.71, D.72, R.76, D.384
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.72, B:D.72
- Water bridges: B:D.72
- Salt bridges: B:R.76, B:D.384
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 5 residues within 4Å:- Chain A: R.107, R.251, D.252
- Chain B: R.251
- Ligands: SO4.20
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:D.252, A:D.252
- Water bridges: A:D.252, B:R.50, B:R.251
- Salt bridges: A:R.107, A:R.251, B:R.251
SO4.10: 1 residues within 4Å:- Chain A: R.293
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.293
SO4.11: 5 residues within 4Å:- Chain A: P.173, Q.178, R.182, S.187, R.190
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.187, A:S.187
- Water bridges: A:T.188
- Salt bridges: A:R.182, A:R.190
SO4.20: 5 residues within 4Å:- Chain A: R.251
- Chain B: R.107, R.251, D.252
- Ligands: SO4.9
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:D.252, B:D.252
- Salt bridges: B:R.107, B:R.251, A:R.251
- Water bridges: A:R.50, A:R.251, A:R.251
SO4.21: 1 residues within 4Å:- Chain B: R.293
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.293
SO4.22: 5 residues within 4Å:- Chain B: P.173, Q.178, R.182, S.187, R.190
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.187, B:S.187
- Water bridges: B:T.188, A:D.24
- Salt bridges: B:R.182, B:R.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Negoro, S. et al., Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction. To be Published
- Release Date
- 2013-10-16
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Negoro, S. et al., Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction. To be Published
- Release Date
- 2013-10-16
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A