- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: D.159, Q.161, G.306, G.307, S.308, T.327, R.328
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.159, A:Q.161, A:S.308, A:T.327, A:R.328, A:R.328
- Water bridges: A:R.302
GOL.3: 3 residues within 4Å:- Chain A: Q.79, Y.81, W.374
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.79
- Water bridges: A:Y.81
GOL.4: 5 residues within 4Å:- Chain A: D.106, R.107, R.251
- Chain B: A.37, D.252
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.107, A:R.107, A:R.251, A:R.251, B:D.252
- Water bridges: A:R.107
GOL.5: 9 residues within 4Å:- Chain A: A.112, Y.215, W.331, I.343, G.344, I.345, Y.370
- Ligands: ACA.1, GOL.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.343
- Water bridges: A:Y.215
GOL.6: 7 residues within 4Å:- Chain A: D.314, G.316, F.317, W.331, Y.370, H.375
- Ligands: GOL.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.314, A:Y.370
- Water bridges: A:H.375
GOL.11: 7 residues within 4Å:- Chain B: D.159, Q.161, G.306, G.307, S.308, T.327, R.328
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.159, B:Q.161, B:S.308, B:T.327, B:R.328, B:R.328
- Water bridges: B:R.302
GOL.12: 3 residues within 4Å:- Chain B: Q.79, Y.81, W.374
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.79
GOL.13: 5 residues within 4Å:- Chain A: A.37, D.252
- Chain B: D.106, R.107, R.251
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.107, B:R.107, B:R.251, B:R.251, A:D.252, A:D.252
- Water bridges: B:R.107
GOL.14: 9 residues within 4Å:- Chain B: A.112, Y.215, W.331, I.343, G.344, I.345, Y.370
- Ligands: ACA.10, GOL.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.215, B:I.343
GOL.15: 7 residues within 4Å:- Chain B: D.314, G.316, F.317, W.331, Y.370, H.375
- Ligands: GOL.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.314
- Water bridges: B:H.375
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.7: 7 residues within 4Å:- Chain A: Y.13, P.30, R.33, W.34, H.38
- Chain B: R.99, G.101
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.99, A:H.38
MES.8: 6 residues within 4Å:- Chain A: Q.69, L.70, P.71, D.72, R.76, D.384
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.72
- Salt bridges: A:R.76, A:D.384
MES.16: 7 residues within 4Å:- Chain A: R.99, G.101
- Chain B: Y.13, P.30, R.33, W.34, H.38
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.99, B:H.38
MES.17: 6 residues within 4Å:- Chain B: Q.69, L.70, P.71, D.72, R.76, D.384
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.72, B:D.72
- Salt bridges: B:R.76, B:D.384
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Negoro, S. et al., Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction. To be Published
- Release Date
- 2013-10-16
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Negoro, S. et al., Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction. To be Published
- Release Date
- 2013-10-16
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A