SMTL ID : 3vyl.1 (1 other biounit)

Structure of L-ribulose 3-epimerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.147, D.180, H.206, E.241 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.147, A:D.180, A:H.206, A:E.241, H2O.2 MN.3: 4 residues within 4Å: Chain B: E.147, D.180, H.206, E.241 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.147, B:D.180, B:H.206, B:E.241, H2O.5 MN.5: 4 residues within 4Å: Chain C: E.147, D.180, H.206, E.241 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.147, C:D.180, C:H.206, C:E.241, H2O.7 MN.6: 4 residues within 4Å: Chain D: E.147, D.180, H.206, E.241 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.147, D:D.180, D:H.206, D:E.241, H2O.10

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 4 residues within 4Å: Chain A: F.276, G.280 Chain B: F.276, G.280 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.276, A:F.276 MPD.4: 1 residues within 4Å: Chain B: M.1 No protein-ligand interaction detected (PLIP) MPD.7: 4 residues within 4Å: Chain C: F.276, L.279, G.280 Chain D: F.276 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:F.276, C:F.276, C:L.279, D:F.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Uechi, K. et al., Structural insight into L-ribulose 3-epimerase from Mesorhizobium loti. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-10-02

Peptides

L-ribulose 3-epimerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-ribulose 3-epimerase

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