SMTL ID : 3vyp.2 (1 other biounit)

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2-N140 adduct with meropenem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.74, H.75, F.76, I.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.75, A:F.76 Water bridges: A:W.255

1 x MXR: (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Covalent)

MXR.2: 8 residues within 4Å: Chain A: M.164, Y.169, Y.179, S.192, G.193, H.213, G.214, C.215 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.169 Hydrogen bonds: A:Y.169, A:Y.179, A:H.213, A:C.215 Salt bridges: A:H.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, W.J. et al., Crystal structure of L,D-transpeptidase LdtMt2 in complex with meropenem reveals the mechanism of carbapenem against Mycobacterium tuberculosis. Cell Res. (2013)

Release Date

2013-06-19

Peptides

Probable conserved lipoprotein LPPS: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Probable conserved lipoprotein LPPS

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