SMTL ID : 3vyq.1

Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

homo-dimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: C.13 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.13, H2O.1 ZN.3: 1 residues within 4Å: Chain D: C.13 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:C.13 ZN.4: 1 residues within 4Å: Chain D: H.8 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.8

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain B: G.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Otani, J. et al., Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4. J.Biol.Chem. (2013)

Release Date

2013-01-16

Peptides

Methyl-CpG-binding domain protein 4: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

Methyl-CpG-binding domain protein 4