SMTL ID : 3vzc.6 (5 other biounits)

Crystal structure of Sphingosine Kinase 1 with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x UUL: 4-{[4-(4-chlorophenyl)-1,3-thiazol-2-yl]amino}phenol(Non-covalent)

UUL.1: 13 residues within 4Å: Chain A: F.170, I.171, V.174, D.175, F.189, T.193, M.269, A.271, F.285, L.296, F.300, M.303, H.308 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.171, A:I.171, A:V.174, A:F.300 Hydrogen bonds: A:T.193 Water bridges: A:D.175

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Y.120, M.147, N.148, L.261, H.262, R.276, C.277 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.148, A:R.276 Water bridges: A:N.148, A:L.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Molecular basis of sphingosine kinase 1 substrate recognition and catalysis. Structure (2013)

Release Date

2013-05-08

Peptides

Sphingosine kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Sphingosine kinase 1

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