SMTL ID : 3vzo.1

Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) N35H mutant with Glu78 covalently bonded to 2-deoxy-2-fluoro-xylobiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x DFX- XYP: beta-D-xylopyranose-(1-4)-1,5-anhydro-2-deoxy-2-fluoro-D-xylitol(Post Translational Modification)

DFX-XYP.1: 15 residues within 4Å: Chain A: Q.7, W.9, H.35, V.37, Y.69, W.71, E.78, Y.80, R.112, P.116, S.117, I.118, F.125, Q.127, Y.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.69, A:Y.80, A:R.112, A:Q.7, A:Q.7, A:Y.69, A:Y.166

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.135, A:K.135 Salt bridges: A:K.135 SO4.3: 2 residues within 4Å: Chain A: T.111, Y.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.111, A:Y.113 Water bridges: A:T.93, A:T.93, A:Y.113, A:Y.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ludwiczek, M.L. et al., Strategies for modulating the pH-dependent activity of a family 11 glycoside hydrolase. Biochemistry (2013)

Release Date

2013-05-08

Peptides

Endo-1,4-beta-xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase

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