SMTL ID : 3vzz.1

Crystal structure of PcrB complexed with FsPP from bacillus subtilis subap. subtilis str. 168

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: R.56, F.58 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:R.56, A:F.58, H2O.4, H2O.4, H2O.4, H2O.6 MG.4: 3 residues within 4Å: Chain B: R.56, F.58, V.60 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:R.56, B:F.58, H2O.8, H2O.8, H2O.12

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: F.58, L.59 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: T.44, E.45 Ligand excluded by PLIP

1 x FPS: S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)

FPS.3: 17 residues within 4Å: Chain B: K.12, G.39, S.40, E.65, V.66, S.67, A.68, I.69, P.82, V.84, W.92, M.96, H.97, A.100, A.127, Y.158, E.160 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:V.66, B:I.69, B:P.82, B:V.84, B:W.92, B:W.92, B:M.96, B:A.100 Hydrogen bonds: B:K.12, B:K.12, B:S.40, B:S.40, B:A.127 Water bridges: B:G.39, B:D.41, B:S.162, B:S.162, B:N.209, B:N.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, F. et al., Insights into TIM-barrel prenyl transferase mechanisms: crystal structures of PcrB from Bacillus subtilis and Staphylococcus aureus. Chembiochem (2013)

Release Date

2012-12-26

Peptides

Heptaprenylglyceryl phosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Heptaprenylglyceryl phosphate synthase

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