SMTL ID : 3w0c.1

Crystal Structure Analysis of Vitamin D receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 6DS: (4S)-4-hydroxy-5-[2-methyl-4-(3-{3-methyl-4-[(1E)-4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-en-1-yl]phenyl}pentan-3-yl)phenoxy]pentanoic acid(Non-covalent)

6DS.1: 28 residues within 4Å: Chain A: T.23, Y.24, F.31, L.57, L.60, A.61, L.63, V.64, Y.66, S.67, K.70, I.98, I.101, R.104, S.105, S.108, W.116, Y.125, V.130, A.133, H.135, L.139, H.227, Y.231, L.234, L.244, V.248, F.252 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.31, A:L.60, A:L.63, A:L.63, A:V.64, A:Y.66, A:I.101, A:W.116, A:W.116, A:W.116, A:Y.125, A:V.130, A:L.139 Hydrogen bonds: A:T.23, A:R.104, A:H.227 Salt bridges: A:R.104 Halogen bonds: A:A.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kashiwagi, H. et al., structure analysis of vitamin D receptor. To be Published

Release Date

2013-11-13

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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