SMTL ID : 3w0p.1

Crystal structure of a thermostable mutant of aminoglycoside phosphotransferase APH(4)-Ia (D198A), ternary complex with ADP and hygromycin B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: L.28, S.29, A.36, V.47, P.75, R.93, R.94, A.95, T.99, L.205, I.215 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.29, A:S.92, A:S.92, A:A.95 Water bridges: A:N.202, A:N.202

1 x HY0: HYGROMYCIN B VARIANT(Non-covalent)

HY0.2: 12 residues within 4Å: Chain A: Q.101, A.198, S.201, N.202, D.216, N.231, W.235, W.238, L.239, M.242, Q.273, D.285 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.101, A:Q.101, A:A.198, A:S.201, A:S.201, A:N.202, A:N.231, A:Q.273, A:D.285 Water bridges: A:N.203, A:Q.273, A:D.280, A:N.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iino, D. et al., Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant. J.Struct.Biol. (2013)

Release Date

2013-08-07

Peptides

Hygromycin-B 4-O-kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hygromycin-B 4-O-kinase