SMTL ID : 3w0y.1

Crystal Structure Analysis of Vitamin D receptor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x DS4: [3-fluoro-2'-methyl-4'-(3-{3-methyl-4-[(1E)-4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-en-1-yl]phenyl}pentan-3-yl)biphenyl-4-yl]acetic acid(Non-covalent)

DS4.1: 28 residues within 4Å: Chain A: Y.24, D.25, F.31, L.57, L.60, A.61, L.63, V.64, Y.66, S.67, I.98, I.101, R.104, S.105, S.108, W.116, C.118, Y.125, V.130, A.133, H.135, L.139, H.227, Y.231, L.234, L.244, V.248, F.252 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.31, A:L.60, A:L.60, A:L.63, A:L.63, A:V.64, A:I.101, A:W.116, A:W.116, A:W.116, A:Y.125, A:Y.125, A:V.130, A:L.139 Hydrogen bonds: A:D.25, A:H.227 Water bridges: A:S.67, A:R.104 Salt bridges: A:R.104 Halogen bonds: A:A.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kashiwagi, H. et al., Crystal Structure Analysis of Vitamin D receptor. TO BE PUBLISHED

Release Date

2013-11-13

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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