- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: G.277, E.278, R.279, R.294
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.279, A:R.279
- Salt bridges: A:R.294
SO4.3: 5 residues within 4Å:- Chain A: S.293, R.294, N.295, Y.297, Y.299
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.293, A:S.293, A:N.295, A:N.295
SO4.4: 5 residues within 4Å:- Chain A: N.298, Y.299, D.301, Q.302
- Ligands: SO4.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.299, A:D.301, A:Q.302
SO4.5: 3 residues within 4Å:- Chain A: M.81, N.298
- Ligands: SO4.4
No protein-ligand interaction detected (PLIP)SO4.6: 4 residues within 4Å:- Chain A: R.33, V.199, S.200, T.203
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.200, A:S.200
- Salt bridges: A:R.33
SO4.7: 6 residues within 4Å:- Chain A: H.51, V.61, T.62, D.63, R.227, H.230
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.61, A:R.227
- Salt bridges: A:H.230
SO4.8: 2 residues within 4Å:- Chain A: P.529, H.531
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.531
SO4.9: 4 residues within 4Å:- Chain A: R.294, R.444, K.450
- Ligands: ATP.1
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.444, A:R.444
- Salt bridges: A:R.294, A:R.444, A:K.450
SO4.10: 1 residues within 4Å:- Chain A: R.164
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.164
SO4.11: 4 residues within 4Å:- Chain A: F.530, H.531, R.532, K.533
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.532, A:K.533
- Salt bridges: A:H.531
SO4.12: 2 residues within 4Å:- Chain A: R.532, K.545
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.545, A:K.545
- Salt bridges: A:K.545
SO4.13: 6 residues within 4Å:- Chain A: L.215, T.219, Q.228, L.236, S.240, T.242
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.240
SO4.14: 4 residues within 4Å:- Chain A: K.163, R.164, K.165, D.166
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.165, A:D.166
SO4.15: 3 residues within 4Å:- Chain A: E.278, Q.302, T.363
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.302
SO4.16: 8 residues within 4Å:- Chain A: T.342, K.474, G.475, S.476, M.480, M.481, G.510, C.511
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.342, A:K.474, A:S.476, A:C.511
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ochi, T. et al., Structure of the catalytic region of DNA ligase IV in complex with an artemis fragment sheds light on double-strand break repair. Structure (2013)
- Release Date
- 2013-04-03
- Peptides
- DNA ligase 4: A
Artemis-derived peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ochi, T. et al., Structure of the catalytic region of DNA ligase IV in complex with an artemis fragment sheds light on double-strand break repair. Structure (2013)
- Release Date
- 2013-04-03
- Peptides
- DNA ligase 4: A
Artemis-derived peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B