SMTL ID : 3w38.1

Sugar beet alpha-glucosidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG.1: 7 residues within 4Å: Chain A: D.362, A.363, K.365, N.402, N.404, P.433, P.435 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.433

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.728, T.730, S.731 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: Y.319, W.320, E.352, R.392, T.769, Q.770, R.773 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.320, A:T.769, A:T.769, A:Q.770 Salt bridges: A:R.392 SO4.4: 5 residues within 4Å: Chain A: D.666, R.670, I.672, R.676, R.699 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.670, A:R.676, A:R.699

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tagami, T. et al., Molecular basis for the recognition of long-chain substrates by plant & alpha-glucosidase. J.Biol.Chem. (2013)

Release Date

2013-05-29

Peptides

Alpha-glucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-glucosidase

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