SMTL ID : 3w3a.1 (5 other biounits)

Crystal structure of V1-ATPase at 3.9 angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-3-3-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: G.228, P.229, G.231, S.232, G.233, K.234, T.235, V.236, T.237, E.261, S.385, F.419 Chain F: Y.325, S.353, R.354 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain F Hydrogen bonds: A:G.228, A:G.231, A:S.232, A:G.233, A:K.234, A:T.235, A:T.235, A:V.236, A:S.385, A:S.385, F:R.354, F:R.354 Salt bridges: A:K.234, A:K.234, F:R.354, F:R.354 ADP.2: 15 residues within 4Å: Chain C: P.229, F.230, G.231, S.232, G.233, K.234, T.235, V.236, T.237, E.261 Chain E: G.324, Y.325, S.353, R.354, N.357 14 PLIP interactions: 9 interactions with chain C, 5 interactions with chain E Hydrogen bonds: C:G.231, C:S.232, C:T.235, C:T.235, C:V.236, C:T.237, C:E.261, E:G.324, E:R.354, E:N.357 Salt bridges: C:K.234, C:K.234, E:R.354, E:R.354

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagamatsu, Y. et al., Origin of Asymmetry at the Intersubunit Interfaces of V1-ATPase from Thermusthermophilus. J.Mol.Biol. (2013)

Release Date

2013-05-15

Peptides

V-type ATP synthase alpha chain: ABC
V-type ATP synthase beta chain: DEF
V-type ATP synthase subunit D: G
V-type ATP synthase subunit F: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

V-type ATP synthase alpha chain

V-type ATP synthase beta chain

V-type ATP synthase subunit D

V-type ATP synthase subunit F

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