SMTL ID : 3w5m.1

Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.179, N.180, N.228, P.233 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.179, A:P.233, H2O.3, H2O.7, H2O.10

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 7 residues within 4Å: Chain A: L.18, G.19, Y.356, Q.357, T.358, Q.475, P.479 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.358, A:T.358 Water bridges: A:L.18, A:L.18, A:G.19, A:Q.475, A:D.477, A:R.481 TRS.3: 11 residues within 4Å: Chain A: D.630, R.634, E.636, W.640, D.643, W.695, W.747, F.851, E.895, M.911, H.916 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.630, A:D.630, A:R.634, A:W.640, A:W.695, A:E.895, A:E.895

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, Z. et al., The structure of a Streptomyces avermitilis alpha-L-rhamnosidase reveals a novel carbohydrate-binding module CBM67 within the six-domain arrangement. J.Biol.Chem. (2013)

Release Date

2013-03-20

Peptides

Putative rhamnosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative rhamnosidase

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